PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.N015600.1

Common Name

B456_N015600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 384aa MW: 44884.1 Da PI: 5.6041

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N015600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	97	2.8e-30	11	365	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lLl+cAea+++gdl+ a+a+L ++ la ++ + +R++ yf+ AL +r ++ l+p ++ ++++ ++ P++ Gorai.N015600.1 11 RLLLSCAEAIEDGDLKSADAFLHNILILADERPfwfGNKKRVVEYFADALVRRAYG--------LHPASS----------YFTFPVDPAPYYHY 86 79********************99995554433689**************........222222..........23333455666666 PP GRAS 94 shltaN....qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvl 181 N + I +a+ ++ r+H iDf+i + + l++L + + p +R+ + +p ++ e ++ e L+k Aee++v++e +v+ Gorai.N015600.1 87 NSYHINgiikKVIDDALMEKGRLHLIDFSIPYYRFQNSVLRTLPNFFGYPLPVRVSYILPPFLKEYVEFSRQMEFLTKDAEEVDVKLEdeLKVV 180 66666611115566777778********9999*****999999*****99999999999999*********6337788 PP GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 + ++l++++ e+++k+ +E+++V ++l +l ++ ++e L +k+++P++v++ + ++h++++Fl+ f ++l+y + +d +e Gorai.N015600.1 181 YGNSLAEVDECEIDFKRrrdDEMVVVYYKFKLDKLGRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSLQYSLKTLDYWE 270 999********99999***********988888888....8999*************************************9 PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkd 364 a ++ k+ e +n+ a eg++ + rh +l +W++ +++aGF+ +pl+++ + ++ + ++ ee+++l+lg k+ Gorai.N015600.1 271 AL---GHNLGWKYGWE------CNIEAGEGNNIIRRHPSLTEWQHLFSMAGFSRIPLNHRKDNLSFEDNPSFAdNSLLEIMgEEEECLILGYKQ 355 98...33333333333......788899*************************999887777777777733334444799****** PP GRAS 365 rpLvsvSaWr 374 rp++++SaW+ Gorai.N015600.1 356 RPMFFLSAWK 365 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.877	1	343	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.7E-28	11	365	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MASSFSDTAL RLLLSCAEAI EDGDLKSADA FLHNILILAD ERPFWFGNKK RVVEYFADAL 60 VRRAYGLHPA SSYFTFPVDP APYYHYNSYH INGIIKKVID DALMEKGRLH LIDFSIPYYR 120 FQNSVLRTLP NFFGYPLPVR VSYILPPFLK EYVEFSRQME FLTKDAEEVD VKLEDELKVV 180 YGNSLAEVDE CEIDFKRRRD DEMVVVYYKF KLDKLGRDAK AMERELVRLK EINPTIVIML 240 DFYSNHTHSN FLTCFKDSLQ YSLKTLDYWE ALGHNLGWKY GWECNIEAGE GNNIIRRHPS 300 LTEWQHLFSM AGFSRIPLNH RKDNLSFEDN PSFADNSLLE IMGEEEECLI LGYKQRPMFF 360 LSAWKPKVED GHFDSNSTNH KFGQ

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MASSFSDTAL RLLLSCAEAI EDGDLKSADA FLHNILILAD ERPFWFGNKK RVVEYFADAL  60
VRRAYGLHPA SSYFTFPVDP APYYHYNSYH INGIIKKVID DALMEKGRLH LIDFSIPYYR  120
FQNSVLRTLP NFFGYPLPVR VSYILPPFLK EYVEFSRQME FLTKDAEEVD VKLEDELKVV  180
YGNSLAEVDE CEIDFKRRRD DEMVVVYYKF KLDKLGRDAK AMERELVRLK EINPTIVIML  240
DFYSNHTHSN FLTCFKDSLQ YSLKTLDYWE ALGHNLGWKY GWECNIEAGE GNNIIRRHPS  300
LTEWQHLFSM AGFSRIPLNH RKDNLSFEDN PSFADNSLLE IMGEEEECLI LGYKQRPMFF  360
LSAWKPKVED GHFDSNSTNH KFGQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	7e-57	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481518.1	0.0	PREDICTED: DELLA protein GAI-like
TrEMBL	A0A0D2WAG8	0.0	A0A0D2WAG8_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.N015600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	4e-32	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.N015600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]