PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.N018000.1
Common NameB456_N018000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 136aa    MW: 15339 Da    PI: 10.0609
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.N018000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.4e-171766150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     k ien+  r +tfskR +gi KK +E S LC+ e++ iifs+tgk y +s
  Gorai.N018000.1 17 KIIENENDRLITFSKRCTGIYKKIYEFSALCGGEILFIIFSQTGKPYSFS 66
                     579******************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.806969IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-21968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-211079IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-171131IPR002100Transcription factor, MADS-box
PfamPF003193.7E-191965IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MASSDKKTKG KQKIEIKIIE NENDRLITFS KRCTGIYKKI YEFSALCGGE ILFIIFSQTG  60
KPYSFSHPPV DLSLNTFQTQ ANLFKKPLML LRFAVFNNLI SLMRDKKIAP ISSMQAPMDE  120
DVPSAFPPRY GPNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1k6o_B6e-14266266Serum response factor
1k6o_C6e-14266266Serum response factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466378.13e-56PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0D2U9002e-94A0A0D2U900_GOSRA; Uncharacterized protein
STRINGGorai.N018000.13e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.17e-17AGAMOUS-like 57
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]