PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000005.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 344aa    MW: 39310.9 Da    PI: 10.1383
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000005.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.5e-1421106899
                           -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +++ k++rl +p kf +++g       ++ ++ + g++W++ l     +++ +l++GW eF +  ++  g ++vF+++g+s+f  +  +
  HL.SW.v1.0.G000005.1  21 PNTIKENRLHIPLKFQRKYGAT--LYNDVFVKLPCGKEWKMGL--ATDDRHLYLQQGWPEFSRHYDIVIGQMIVFRYKGNSKF--KALI 103
                           67788999***********855..7779***************..999999****************************9999..7777 PP

                           E-S CS
                    B3  97 frk 99 
                           f+k
  HL.SW.v1.0.G000005.1 104 FDK 106
                           766 PP
2B360.23.6e-19215319199
                           EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 
                           f+kv+ ps+v+ +  rl ++  fa++h   ++ +++  tl+l+ + g++W+ +++y+k++g     +++GWk F+++n L+ gD++vF 
  HL.SW.v1.0.G000005.1 215 FKKVMQPSYVHGRhPRLKISTIFATNHlidKLGPKKCGTLKLKVPGGKTWSANFTYCKSKGVvtAKFASGWKAFAQENSLDIGDVCVFV 303
                           7899999999877479**************44455566******************999998667788********************* PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                           l++++e ++ v ++rk
  HL.SW.v1.0.G000005.1 304 LTNDREVTFDVIIYRK 319
                           *988888788888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-229107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-2110114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1413105No hitNo description
PROSITE profilePS5086312.71714107IPR003340B3 DNA binding domain
SMARTSM010192.2E-1115107IPR003340B3 DNA binding domain
PfamPF023625.5E-1217105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-23204323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20210320IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-20213318No hitNo description
PfamPF023622.4E-16215319IPR003340B3 DNA binding domain
SMARTSM010196.1E-14215320IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266216320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MACSHCGRKK ETPHFFVIIL PNTIKENRLH IPLKFQRKYG ATLYNDVFVK LPCGKEWKMG  60
LATDDRHLYL QQGWPEFSRH YDIVIGQMIV FRYKGNSKFK ALIFDKTTTE IDYPAPPVPH  120
GEGSKGKEKE SPSLSSWRQK RMKTNHGFGE TKGESSKKND KVIKSEEDDG ERRTNIRERR  180
TRKYDVHGRM KPLQSTEKSE ALEKARGFPS DKHFFKKVMQ PSYVHGRHPR LKISTIFATN  240
HLIDKLGPKK CGTLKLKVPG GKTWSANFTY CKSKGVVTAK FASGWKAFAQ ENSLDIGDVC  300
VFVLTNDREV TFDVIIYRKN QNANSPIHEG EETEISSESS YSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-32B3 family protein