PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000105.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 234aa    MW: 25995.2 Da    PI: 8.544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000105.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781.1e-2481137259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e++++ ++v+e++Y+++H+h+
  HL.SW.v1.0.G000105.1  81 SDGYNWRKYGQKQVKSPQGSRSYYKCTYFECCAKK-IECCDHSGHVTEVVYKSQHTHD 137
                           7********************************98.*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.27E-2079139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-2179139IPR003657WRKY domain
SMARTSM007741.6E-2380138IPR003657WRKY domain
PROSITE profilePS5081116.92681139IPR003657WRKY domain
PfamPF031061.8E-1782137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVQCLDAPKE KQHQSNACRT LSELSPTSVT QSISSAPSPI LLEQRLSPPK DNDLCTPVPK  60
KRNSSDLKIV SPVPAVKIPA SDGYNWRKYG QKQVKSPQGS RSYYKCTYFE CCAKKIECCD  120
HSGHVTEVVY KSQHTHDPPK KSNNTRENKL TSAERFPGYN VAKQPCKVPK DSEPSTSAKE  180
STHETPPCSE RKRENLVNTD ENGDPKVKEE LDNEPEQKKR QVSGEVVSSI VVL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016991.12e-92probable WRKY transcription factor 32 isoform X2
SwissprotP595833e-35WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2P5FNQ31e-114A0A2P5FNQ3_TREOI; WRKY domain containing protein
STRINGXP_010086863.17e-94(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-37WRKY DNA-binding protein 32