PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G000205.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

ZF-HD

Protein Properties

Length: 101aa MW: 10779 Da PI: 8.0662

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G000205.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.7	5.8e-33	23	78	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC+kNhAas+Gg+avDGC+Efm+s geegt+aal+CaACgCHRnFHRreve HL.SW.v1.0.G000205.1 23 SVRYGECQKNHAASVGGYAVDGCREFMAS-GEEGTTAALTCAACGCHRNFHRREVEA 78 79************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-17	1	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.5E-31	24	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.4E-28	25	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.469	26	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MRKRQVVVRR EEISRSMAAA VRSVRYGECQ KNHAASVGGY AVDGCREFMA SGEEGTTAAL 60 TCAACGCHRN FHRREVEASS TNHHEVVCDS CSSPSSSNGV *

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022740047.1	8e-48	mini zinc finger protein 2-like
Swissprot	Q9LJW5	1e-38	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A061EEU8	2e-43	A0A061EEU8_THECC; Mini zinc finger 2 isoform 1
TrEMBL	A0A061EGD2	2e-43	A0A061EGD2_THECC; Mini zinc finger 2 isoform 2 (Fragment)
TrEMBL	B9T6Z4	9e-44	B9T6Z4_RICCO; Transcription factor, putative
STRING	EOY03457	4e-44	(Theobroma cacao)
STRING	XP_002534013.1	2e-44	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-24	mini zinc finger 2

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]