PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G000300.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SRS

Protein Properties

Length: 398aa MW: 40940.1 Da PI: 8.5071

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G000300.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.5	1e-65	177	338	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 s t++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa+rrerq +++a a ++ ++ ++ + +++++s+t++ HL.SW.v1.0.G000300.1 177 SSTTTCQDCGNQAKKDCTHRRCRTCCKSRGFECSTHVKSTWVPAARRRERQLMTTAGPGGGAGPGSSGSTSGAKKPRLITSQTTSHTST 265 57889*******************************************999988776666555444444444444557778889999 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+++++++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ HL.SW.v1.0.G000300.1 266 SNTTPPRSFDTSSshqdasfketLPGQVRARAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVET 338 99***999999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.9E-62	179	337	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.2E-27	181	223	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-29	289	336	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MWSGPSSRSI NYGLPPEMGM VGLRDVFVVA PASSFHHNNH HHHHHHNLNH DPNLIPDHSL 60 NGSNPATALG VGVGVGVIPL LTAAPCLGPS QLDEAASAAE ANALGSSAAA RSRSGGIQLW 120 QSQNQQAAAI SATQPQLHPH FFKKPSILDH GNSGIGGNFV NQGGGGAGIV GSGSTSSSTT 180 TCQDCGNQAK KDCTHRRCRT CCKSRGFECS THVKSTWVPA ARRRERQLMT TAGPGGGAGP 240 GSSGSTSGAK KPRLITSQTT SHTSTSNTTP PRSFDTSSSH QDASFKETLP GQVRARAVFK 300 CVRVTAVEDG EDEYAYQAVV KIGGHVFKGF LYDQGVETRD SFPNLSELHL GGGGGGGVGG 360 GRNGASTSSS PMLDPSDVYA ATTAGLLGGS TYGNPIN*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MWSGPSSRSI NYGLPPEMGM VGLRDVFVVA PASSFHHNNH HHHHHHNLNH DPNLIPDHSL  60
NGSNPATALG VGVGVGVIPL LTAAPCLGPS QLDEAASAAE ANALGSSAAA RSRSGGIQLW  120
QSQNQQAAAI SATQPQLHPH FFKKPSILDH GNSGIGGNFV NQGGGGAGIV GSGSTSSSTT  180
TCQDCGNQAK KDCTHRRCRT CCKSRGFECS THVKSTWVPA ARRRERQLMT TAGPGGGAGP  240
GSSGSTSGAK KPRLITSQTT SHTSTSNTTP PRSFDTSSSH QDASFKETLP GQVRARAVFK  300
CVRVTAVEDG EDEYAYQAVV KIGGHVFKGF LYDQGVETRD SFPNLSELHL GGGGGGGVGG  360
GRNGASTSSS PMLDPSDVYA ATTAGLLGGS TYGNPIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651514.2	1e-143	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-79	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2P5DR48	1e-178	A0A2P5DR48_PARAD; Uncharacterized protein
STRING	VIT_06s0009g03450.t01	1e-137	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	9e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]