PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000391.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 92aa    MW: 10170.5 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000391.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-0821571854
                          HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +  ++Lr+l+P+ + + ps+K+s + +L+++++YI++L
  HL.SW.v1.0.G000391.1 21 ELVSKLRQLVPEiR-NRPSGKVSASKVLQETCNYIRNL 57
                          56689*******77.9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.039357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-81773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-91776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-52157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSG SSRISDDQIL ELVSKLRQLV PEIRNRPSGK VSASKVLQET CNYIRNLNRE  60
VDDLSDRLSQ LLATIDADSA EAAIIRSLVT Q*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022134204.17e-50transcription factor PRE6
SwissprotQ9LJX11e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2I4FW899e-48A0A2I4FW89_JUGRE; transcription factor PRE6-like
STRINGXP_008230751.13e-46(Prunus mume)
STRINGEMJ163983e-46(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-33bHLH family protein