PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000648.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 292aa    MW: 34050.2 Da    PI: 9.4079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000648.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.1e-139723198
                          .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                           +sk ++l+ +sg  Wevkl  +k++++++l++GW +F++ + L+ g ++ F+++g+s+f  +v +++
  HL.SW.v1.0.G000648.1  9 DTSKPVVLKVPSGGAWEVKL--TKYDDHVWLGEGWPDFARHHFLQRGYSLFFRYEGQSRF--YVVIVD 72
                          466779**************..*********************************99999..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.534174IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-15876IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-9872IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-14976IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-121172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLKYGTKIDT SKPVVLKVPS GGAWEVKLTK YDDHVWLGEG WPDFARHHFL QRGYSLFFRY  60
EGQSRFYVVI VDENGCEIYY PVNNSKHFDK VNPSFDELPK KGEENKDFHC DENVNSQSPY  120
SRRMIIPTPP FPSPKRKMRG NKNKKNDDEY TCYKEQLNIK DSEDSESEAI YCKKKGRFKA  180
RAKRSMTVEE KDKALYRTKN FTSRNPFFRT VIQKTHVHDR YDMALQSDFW RQQMAEKSGY  240
ITLSKFPLTE QLNAVIETAN NVNEDHTSSK VTHGTASSSK DDSFWRSNQT I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-19B3 family protein