PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G000720.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 515aa MW: 55242.9 Da PI: 8.5345

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G000720.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	156	216	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s HL.SW.v1.0.G000720.1 156 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTS 216 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	153	213	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-32	158	214	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	160	214	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	162	198	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MSQFKDPAIN IKLFGKTINL PSNQELASRN GQSFASASFV DSDMAAFGAS ESSPDHNLRL 60 SSSSSSSSSS NIATSPKDES TVDLDKETSG TELASEKDNS SYQVAEDFKD PISLSAVNSK 120 NRTSPSVEGE SSSLKSSKST EQSDISNSQE KTLKKPDKII PCPRCNSMDT KFCYYNNYNV 180 NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKNTSTSHY RHIIMSDVLQ KAQAFAANGV 240 HNPTLGSSGT VLSFGSDSPL CESMASALNL ADRTKNSVSK GFHGLEKRMF VSSGGGAENG 300 ENHSSGSSVT ASASSDKGRK PVVLDSQGFS QVPCFPGAPW QYPWNSAQWT SALPPGFCHS 360 GFPVSFYPAP PYWGSNVPAS WNVPCFSPSS STTTHSSAGT VPNSSALGKH SREGEILNPT 420 TSEKKDSLKE NSCSERSVLI PKTLRIDDPT EAAKSSIWAT LGINNEKFNS VNGGHLYKAF 480 QSKRNDKNHV VEMSPVLQAN PAALSRSLNF LEST*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MSQFKDPAIN IKLFGKTINL PSNQELASRN GQSFASASFV DSDMAAFGAS ESSPDHNLRL  60
SSSSSSSSSS NIATSPKDES TVDLDKETSG TELASEKDNS SYQVAEDFKD PISLSAVNSK  120
NRTSPSVEGE SSSLKSSKST EQSDISNSQE KTLKKPDKII PCPRCNSMDT KFCYYNNYNV  180
NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKNTSTSHY RHIIMSDVLQ KAQAFAANGV  240
HNPTLGSSGT VLSFGSDSPL CESMASALNL ADRTKNSVSK GFHGLEKRMF VSSGGGAENG  300
ENHSSGSSVT ASASSDKGRK PVVLDSQGFS QVPCFPGAPW QYPWNSAQWT SALPPGFCHS  360
GFPVSFYPAP PYWGSNVPAS WNVPCFSPSS STTTHSSAGT VPNSSALGKH SREGEILNPT  420
TSEKKDSLKE NSCSERSVLI PKTLRIDDPT EAAKSSIWAT LGINNEKFNS VNGGHLYKAF  480
QSKRNDKNHV VEMSPVLQAN PAALSRSLNF LEST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108679.1	0.0	cyclic dof factor 2
TrEMBL	A0A2P5G0I1	0.0	A0A2P5G0I1_TREOI; Zinc finger, Dof-type
STRING	XP_010108679.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-90	cycling DOF factor 2