PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000767.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 21068.3 Da    PI: 10.7342
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000767.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.7e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien + rqvtfskRrng+lKKA+ELS LCdaev ++ifs++gkly y+s
  HL.SW.v1.0.G000767.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAEVGLVIFSPSGKLYQYAS 59
                          79***********************************************86 PP
2K-box76.19.3e-2682172999
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           + +++ e +++e++ +k+ +e+++ ++R+l GedL++L +keL+qLe+qL+ +++++RskK +++ e+i++l+++ ++l een++L+kk
  HL.SW.v1.0.G000767.1  82 QRSRTLEFWRTEIEEMKRSTETMEGNLRNLAGEDLSTLGMKELKQLERQLKIGVERVRSKKRRIVSEHINYLKRRRRALIEENTQLQKK 170
                           5677899*********************************************************************************9 PP

                 K-box  98 le 99 
                           ++
  HL.SW.v1.0.G000767.1 171 VK 172
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-31274IPR002100Transcription factor, MADS-box
CDDcd002652.81E-38270No hitNo description
PRINTSPR004041.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2284171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.41387180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AEVGLVIFSP SGKLYQYASH  60
DMDRSIVRYR SEMGLLGSAD NQRSRTLEFW RTEIEEMKRS TETMEGNLRN LAGEDLSTLG  120
MKELKQLERQ LKIGVERVRS KKRRIVSEHI NYLKRRRRAL IEENTQLQKK VKLLDQQQEA  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-24169169MEF2 CHIMERA
6byy_B3e-24169169MEF2 CHIMERA
6byy_C3e-24169169MEF2 CHIMERA
6byy_D3e-24169169MEF2 CHIMERA
6bz1_A3e-24169169MEF2 CHIMERA
6bz1_B3e-24169169MEF2 CHIMERA
6bz1_C3e-24169169MEF2 CHIMERA
6bz1_D3e-24169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141157KRRIVSEHINYLKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017888.11e-103agamous-like MADS-box protein AGL1
TrEMBLA0A2P5FDA01e-112A0A2P5FDA0_TREOI; MADS-box transcription factor
STRINGVIT_17s0000g01230.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-48AGAMOUS-like 20