PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001099.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 435aa    MW: 47900 Da    PI: 7.6939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001099.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-16127172147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  HL.SW.v1.0.G001099.1 127 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 172
                           899*****************************.***********996 PP
2Myb_DNA-binding56.94.7e-18179222146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  HL.SW.v1.0.G001099.1 179 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 222
                           678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PROSITE profilePS5129417.813122173IPR017930Myb domain
SMARTSM007172.4E-14126175IPR001005SANT/Myb domain
SuperFamilySSF466893.22E-28127220IPR009057Homeodomain-like
PfamPF002498.4E-16127172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-26128180IPR009057Homeodomain-like
CDDcd001674.16E-13130171No hitNo description
PROSITE profilePS5129427.372174228IPR017930Myb domain
SMARTSM007178.9E-15178226IPR001005SANT/Myb domain
PfamPF002491.1E-14179221IPR001005SANT/Myb domain
CDDcd001676.90E-12181221No hitNo description
Gene3DG3DSA:1.10.10.606.7E-21181227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MANHRLIYRT EENQNGSSSG TLSCYSSSSS YSCYSSSMRM VYADMGSLSL SPNLGVVSSA  60
SSQDSYSMSK CSEVENGRAF WGFPLMEGSK GCDISNRINL EDENLSENVV ISTGKEADNG  120
QSKLCTRGHW RPAEDAKLKE LVALYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINRR  180
AFTEEEEERL MQAHRIYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAYRRRKL  240
SQSIYRRIEE NSNFVVCGET IPRSEQPLPY CSLNNLSNGG LGNVSAYPFG AFHGNNISSG  300
GGGDGVSYGL TCSPQMTNCG EAIISTTNVH SANGGFCAQE TPFEFFPGAK HRTWEHIRPT  360
IDETQSRTGG LRHNSSYYQN FNESFSNSTA STSQVSAGDQ PSSSGAVEQN ATSHFGKISI  420
SPPPFIDFLG VGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341272277107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651935.11e-147PREDICTED: transcription factor RAX1
TrEMBLA0A2P5BZB20.0A0A2P5BZB2_PARAD; MYB transcription factor
STRINGVIT_01s0026g02600.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-76myb domain protein 105