PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001232.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 196aa MW: 22220.4 Da PI: 10.0535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001232.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9e-06	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H HL.SW.v1.0.G001232.1 88 FICEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	14.2	0.00013	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + HL.SW.v1.0.G001232.1 165 WKCEKCSKRYAVQSDWKAHSKIC 187 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.9E-6	87	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.82E-8	87	110	No hit	No description
Pfam	PF12171	1.8E-5	88	110	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	88	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	130	160	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.8E-5	153	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.82E-8	160	185	No hit	No description
SMART	SM00355	130	165	185	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MMKGLMVDDN MSNLTFASSG EIVSASSSST RNDQSLGTTM YPQNSSASTN QELPPPPNKK 60 KRNLPGNPDP EAEVVALSPK TLLTTNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS 120 SKDVIKKKVY VCPEPSCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKICGTR EYRCDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-18	161	196	3	38	Zinc finger protein JACKDAW
5b3h_F	9e-18	161	196	3	38	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097054.1	1e-120	protein indeterminate-domain 7
Swissprot	Q8H1F5	3e-95	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2P5FDZ7	1e-123	A0A2P5FDZ7_TREOI; TFIIH C1-like domain containing protein
STRING	XP_010097054.1	1e-120	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-87	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]