PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001378.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 450aa    MW: 49510 Da    PI: 8.8403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001378.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32196252360
                           -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers  d+++ ei+Y+geHnh+k
  HL.SW.v1.0.G001378.1 196 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCVVKKKVERSF-DGQIAEIVYKGEHNHSK 252
                           9***************************************.***************85 PP
2WRKY97.49.2e-31366423359
                           -SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+vkg+++p rsYYrCts +C+v+k+ver+++dpk +++tYeg+Hnh+
  HL.SW.v1.0.G001378.1 366 DGFRWRKYGQKVVKGNPYPsRSYYRCTSVKCNVRKHVERASDDPKSFITTYEGKHNHD 423
                           9*****************889************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29189253IPR003657WRKY domain
SuperFamilySSF1182901.05E-25192253IPR003657WRKY domain
SMARTSM007741.6E-35194252IPR003657WRKY domain
PROSITE profilePS5081123.456196253IPR003657WRKY domain
PfamPF031062.1E-24196250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-31351425IPR003657WRKY domain
PROSITE profilePS5081132.064359425IPR003657WRKY domain
SuperFamilySSF1182901.26E-25363425IPR003657WRKY domain
SMARTSM007744.9E-35364424IPR003657WRKY domain
PfamPF031067.5E-24366423IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MNLKESERTV ISKPVASRPS CSSLRSFSEL LAGAIHASPS NTSSEAAVPA AIRPKTVRFK  60
PMTVYGAAPE LLSSQVTEIC GTAACSKPDG GSTVVYKPLA KVVSKTTVSL LANMGNFNNS  120
FQQTHSLVDS QAQHPQQEKE SFRSQHSSYL NPSVSVRAET NQMVVPSKIA SPPQNQEEED  180
PKSLPSIANS DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC THPNCVVKKK VERSFDGQIA  240
EIVYKGEHNH SKPLPAKRNS SSVTPALADA APSLDANHQL WHSQVNEKNE CCEGEVGVLL  300
THSGQGKASQ PYDSFSVEPE AEDDEPRQKR RKGENQSHEA GTSAGEGTQE GRVMQNSNDL  360
ENISGDGFRW RKYGQKVVKG NPYPSRSYYR CTSVKCNVRK HVERASDDPK SFITTYEGKH  420
NHDMPIKTTP NLVSSEIHTK APRDTPHAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28196425877Probable WRKY transcription factor 4
2lex_A1e-28196425877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6474121e-132KJ647412.1 Humulus lupulus clone HL5637 WRKY transcription factor gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899555.10.0WRKY transcription factor 44
TrEMBLA0A2P5FXH40.0A0A2P5FXH4_TREOI; WRKY domain containing protein
STRINGXP_010100844.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-88WRKY family protein