PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001500.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 291aa    MW: 32323.8 Da    PI: 9.6811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001500.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16453148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                          r+rW  eEd ll  +vkq+G+++W++I+++mg  ++R +k+c +rw +yl
  HL.SW.v1.0.G001500.1  4 RQRWQLEEDALLRAYVKQYGPKDWNLISQRMGkpLHRDPKSCLERWKNYL 53
                          89**********************************************97 PP
2Myb_DNA-binding34.16.3e-1159103147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
  HL.SW.v1.0.G001500.1  59 KGSLTPDEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                           6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.499157IPR017930Myb domain
SMARTSM007171.2E-14355IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-22498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-20660IPR009057Homeodomain-like
CDDcd001678.86E-11653No hitNo description
PfamPF139211.2E-14769No hitNo description
SMARTSM007172.6E-958106IPR001005SANT/Myb domain
PROSITE profilePS5129417.34558108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-1561108IPR009057Homeodomain-like
CDDcd001679.22E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKERQRWQLE EDALLRAYVK QYGPKDWNLI SQRMGKPLHR DPKSCLERWK NYLKPGLKKG  60
SLTPDEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LHKNNKFSSS  120
SSSLLISGTN SLQSHQLYPE GNIPVVAVGS PENAAQGPYD HILETFAEKY VQPKLYAAVN  180
GAAFMPAMVV ADPDPVLSLG SVNSDAPSAA TVVPPWMNHS SSSAATSSLS SCTSSTPSPS  240
VSLSLSLSEP VIDTDMNRFI PVQQLGSVVQ YCKELEEGRL SWLQHKKEAT W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-1411100995MYB3
3zqc_D1e-1411100995MYB3
3zqc_G1e-1411100995MYB3
3zqc_J1e-1411100995MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022935393.11e-123protein rough sheath 2 homolog
TrEMBLA0A2P5F6W91e-147A0A2P5F6W9_TREOI; Octamer-binding transcription factor
STRINGXP_009349281.11e-120(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.12e-66MYB family protein