PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001553.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 188aa MW: 21315 Da PI: 9.099

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001553.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	28	81	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+R ++t+ q++ Le+ F ++++++ e++ +LA+klgL+ rqV +W+qNrRa++k HL.SW.v1.0.G001553.1 28 RTR-RLTQAQVRLLETSFTSDHKLQSERKLHLAAKLGLSPRQVAIWYQNRRARHK 81 444.89***********************************************99 PP
2	HD-ZIP_I/II	102.6	3.4e-33	28	119	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 + rrl++ qv+lLE+sF++++kL++erK +la +Lgl+prqva+W+qnrRAR+kt+ +E dy++++ ++d + +e++rLe+ev L++e HL.SW.v1.0.G001553.1 28 RTRRLTQAQVRLLETSFTSDHKLQSERKLHLAAKLGLSPRQVAIWYQNRRARHKTQTVEFDYRSIQLKLDDVLAEKKRLEREVGMLKHE 116 789************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l++ HL.SW.v1.0.G001553.1 117 LNR 119 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-18	18	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.406	23	83	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	26	87	IPR001356	Homeobox domain
CDD	cd00086	2.20E-14	27	83	No hit	No description
Pfam	PF00046	1.1E-15	28	81	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.7E-18	32	81	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	54	63	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	58	81	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	63	79	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDFQCLDILT DETKQNQDLS KPLTQQRRTR RLTQAQVRLL ETSFTSDHKL QSERKLHLAA 60 KLGLSPRQVA IWYQNRRARH KTQTVEFDYR SIQLKLDDVL AEKKRLEREV GMLKHELNRA 120 REMLLRASGN DGGGRSSPDA SLPSVISTSG VDDHGSSSSL QNYYTFGTEN VAELPVGELY 180 TCLSPWP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093963.1	6e-77	homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A2P5FJ64	5e-96	A0A2P5FJ64_TREOI; Octamer-binding transcription factor
STRING	XP_010093963.1	2e-76	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-22	homeobox protein 40