PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001811.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 217aa MW: 25325.6 Da PI: 6.8938

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001811.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	49	96	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eE ++lv +++++ ++W++ ++ g++R++k+c++rw +yl HL.SW.v1.0.G001811.1 49 KGPWTPEENQQLVLYIQKHAHRSWRSLPKLAGLNRCGKNCRLRWTNYL 96 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.185	44	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-20	47	95	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-11	48	98	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-14	49	96	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.9E-20	50	119	IPR009057	Homeodomain-like
CDD	cd00167	5.45E-9	51	96	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.4E-7	96	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSCNPTNPPN DQPYMSVCPM ENPPINYDHI DTCTLMGLSP FCDENGLKKG PWTPEENQQL 60 VLYIQKHAHR SWRSLPKLAG LNRCGKNCRL RWTNYLRPDI KRGKFSQDED QTILHLHSIL 120 MVYDRHTLTG TYSQRNKEFL EYPFEEEANS DGFRSMTHHP RADPFSSLPY LMADLANLKH 180 LFQLNNNNNN LDHQYENDHF CLTRLQLLQS LLAPNIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-13	47	120	5	77	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981109.1	2e-60	PREDICTED: protein ODORANT1 isoform X1
Swissprot	Q9S9Z2	6e-54	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2P5G1S2	3e-65	A0A2P5G1S2_TREOI; MYB transcription factor
STRING	EOY16000	1e-58	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	5e-56	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]