PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001821.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 245aa    MW: 27529.6 Da    PI: 8.1632
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001821.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-32101203199
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  HL.SW.v1.0.G001821.1 101 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG 189
                           89***************************966778999*************************************************76 PP

                           SSSEE..EEEEE-S CS
                    B3  86 grsefelvvkvfrk 99 
                            +++++l++ ++r+
  HL.SW.v1.0.G001821.1 190 VTDKERLFIDWRRR 203
                           669999*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4396209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-3198206IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-2699188No hitNo description
PROSITE profilePS5086314.847101204IPR003340B3 DNA binding domain
SMARTSM010194.3E-24101204IPR003340B3 DNA binding domain
PfamPF023624.7E-30101203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDFESSARDN NRMGFSHEDS IEHSTIMATR GGVGAGPSWA TAADRSIDDH QMMMMMNGPD  60
TKLELMNSSP ASGNDDAVSM SRSSSGGGGG AAVVVEREHM FDKVVTPSDV GKLNRLVIPK  120
QHAEKYFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA  180
GDIVSFQRGV TDKERLFIDW RRRPEAVLPD HSSTINIPFS FHHNQHQSPH HHHHHHPTSR  240
GALR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-66942061116B3 domain-containing transcription factor NGA1
5os9_B3e-66942061116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0964593e-67FP096459.1 Phyllostachys edulis cDNA clone: bphylf028l17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550733.14e-80B3 domain-containing transcription factor NGA1 isoform X2
SwissprotO827997e-68NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2P5CJ929e-95A0A2P5CJ92_TREOI; B3 DNA binding domain containing protein
STRINGXP_008239252.12e-75(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]