PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001899.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SBP

Protein Properties

Length: 150aa MW: 16997.2 Da PI: 10.2282

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001899.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	107.6	8.6e-34	39	116	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++ + dls ak+ hrrhkvCe h k++++lv++++qrfCqq srfh lsefDe+k+s rrrL +hn+rrrk+q+ HL.SW.v1.0.G001899.1 39 MCQVDNYKDDLSVAKDCHRRHKVCELHNKSTKALVANQMQRFCQQFSRFHPLSEFDEGKQSFRRRLTGHNRRRRKTQP 116 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.5E-27	34	101	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	26.196	37	114	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-30	38	118	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-23	40	113	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MPHSALIWGG GFTCGDDPGS RPNKRVRSGS PGSTTTYPMC QVDNYKDDLS VAKDCHRRHK 60 VCELHNKSTK ALVANQMQRF CQQFSRFHPL SEFDEGKQSF RRRLTGHNRR RRKTQPDDVG 120 SRLVLPGDRD NKINGHLDIF NMLAALACAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-25	29	113	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867006.1	5e-70	squamosa promoter-binding-like protein 14
Refseq	XP_015879984.1	5e-70	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	1e-52	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	W9R6Y2	1e-64	W9R6Y2_9ROSA; Squamosa promoter-binding-like protein 14
STRING	XP_010094493.1	2e-65	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	3e-45	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]