PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002035.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 377aa    MW: 42529.2 Da    PI: 6.9988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002035.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg W++eEd++l+  ++ +G g+W+++++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G002035.1 13 RGLWSPEEDDKLLTHITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                          788*******************************************97 PP
2Myb_DNA-binding56.37.5e-1866109146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  HL.SW.v1.0.G002035.1  66 KGSFTQEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-26563IPR009057Homeodomain-like
PROSITE profilePS5129416.644860IPR017930Myb domain
SuperFamilySSF466891.65E-2910107IPR009057Homeodomain-like
SMARTSM007177.0E-121262IPR001005SANT/Myb domain
PfamPF002491.5E-141360IPR001005SANT/Myb domain
CDDcd001672.58E-101660No hitNo description
PROSITE profilePS5129427.53961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2664115IPR009057Homeodomain-like
SMARTSM007175.8E-1765113IPR001005SANT/Myb domain
PfamPF002494.2E-1666109IPR001005SANT/Myb domain
CDDcd001671.02E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGHRCCNKQK VKRGLWSPEE DDKLLTHITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKKGSFT QEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPQTHNLMTL SSSSSSSHHR NNKNFCSSFV ISQNNHHYGK QVPNNNHVVS SSIFSVNNSH  180
DDIITKNCNS SNNNMLTLPS NTKSTPISTF NFQCQNPNNI TTSTTILTCN TSPATPNWNF  240
SKTQNPSQYD IVLTPTISSS SSSSVNVQSL SRPGLLDNLG ICGSSFDPVE EPTMVPEYDH  300
LQQPTLNGVQ DDHERDPNQQ QDHEKDVKIW DMEIDKARNY DDHSSFDLGF MDSTFNLSGV  360
MCHDLSSMEY DLAWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092474.11e-114myb-related protein 308
TrEMBLA0A2P5BL381e-151A0A2P5BL38_PARAD; MYB transcription factor
STRINGXP_010092474.11e-113(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-84myb domain protein 67