PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002087.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 338aa MW: 39522.3 Da PI: 8.6645

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002087.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.6	5.2e-32	16	134	5	127
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 f+F+Pt+eel+ +L+ k+ gk+ +l++ i+ev +i+k++Pw+Lp+ k+ ++++ew+f ++ d k+++++r+nr+tk+gyWk+tgk+ HL.SW.v1.0.G002087.1 16 FKFKPTEEELI-THLNLKTLGKESDLDSYIAEVdHICKWQPWELPHfsKI-ESKTEWWFLCRPDYKNNHSNRSNRTTKTGYWKKTGKEC 102 9********.89********88966******52244.3567****************************66 PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + + g k++Lvf++g+ ++g++tdWv+hey HL.SW.v1.0.G002087.1 103 NTKG----CDGRKRILVFHDGS-SSGKRTDWVLHEYY 134 5544....679****765.5789******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.864	12	157	IPR003441	NAC domain
SuperFamily	SSF101941	8.24E-32	14	157	IPR003441	NAC domain
Pfam	PF02365	1.5E-16	14	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSDYVPVWVR PPCPFFKFKP TEEELITHLN LKTLGKESDL DSYIAEVDHI CKWQPWELPH 60 FSKIESKTEW WFLCRPDYKN NHSNRSNRTT KTGYWKKTGK ECNTKGCDGR KRILVFHDGS 120 SSGKRTDWVL HEYYSLQPNV AFSLQKPDYV ICRLKRKQQE KGQNECEMAS DLGNPLVSTT 180 TTMVNNVISS PQQQLCSPEL CNTEALPDED IWALIDMPEF SWNELEKCLV SAEITYNSSN 240 MRDPSMSLHD GPLSSNTQAV EINEPYIQTW RAEVHLVRFL AQRKSRVSEW FRHQVKLYII 300 LWIKIPYKKQ LFPLFIRVSK WMLLLLAKRH SKRSSAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-20	14	158	19	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-20	14	158	19	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-20	14	158	19	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-20	14	158	19	166	NO APICAL MERISTEM PROTEIN
3swm_A	6e-20	14	158	22	169	NAC domain-containing protein 19
3swm_B	6e-20	14	158	22	169	NAC domain-containing protein 19
3swm_C	6e-20	14	158	22	169	NAC domain-containing protein 19
3swm_D	6e-20	14	158	22	169	NAC domain-containing protein 19
3swp_A	6e-20	14	158	22	169	NAC domain-containing protein 19
3swp_B	6e-20	14	158	22	169	NAC domain-containing protein 19
3swp_C	6e-20	14	158	22	169	NAC domain-containing protein 19
3swp_D	6e-20	14	158	22	169	NAC domain-containing protein 19
4dul_A	7e-20	14	158	19	166	NAC domain-containing protein 19
4dul_B	7e-20	14	158	19	166	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028463.1	3e-39	protein NTM1-like 9
TrEMBL	A0A2P5FH96	1e-81	A0A2P5FH96_TREOI; NAC domain containing protein
STRING	XP_010107113.1	1e-38	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19852	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	1e-22	NAC domain containing protein 62