PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002681.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 469aa    MW: 52371 Da    PI: 8.077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002681.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3542.9e-1770161199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffkv+  +  +++ +l lp kf++e ++    +k  +led+ g++W+v++  ++  g+  +++GW++F+ +++Lk gDfv+F ++   e
  HL.SW.v1.0.G002681.1  70 FFKVMFGEEEFST-LLFLPPKFVKELSLM--AGKIAILEDSCGEQWDVRV--SRVEGSLAFQQGWSKFALDHDLKMGDFVLFLHIT--E 151
                           7888888888877.5***********776..45689**************..99999**************************775..6 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           ++lvvk++++
  HL.SW.v1.0.G002681.1 152 THLVVKIYDS 161
                           777***9986 PP
2B343.65.2e-144034643295
                           --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           e k + l+d+s + W v +    + +  ++t+GW+ F+kang+++gD ++Fk +++se+ + v+
  HL.SW.v1.0.G002681.1 403 ERKLVFLRDSSQKLWPVVY--HENLNVQFITNGWEAFCKANGIQSGDQCLFKIENESEGIYSVS 464
                           446899*************..999999*************************887787755555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2166164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-2068163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99969162IPR003340B3 DNA binding domain
CDDcd100171.17E-1869160No hitNo description
SMARTSM010193.5E-1270162IPR003340B3 DNA binding domain
PfamPF023624.2E-1570161IPR003340B3 DNA binding domain
SMARTSM010190.064383464IPR003340B3 DNA binding domain
CDDcd100171.11E-8391452No hitNo description
SuperFamilySSF1019364.32E-13391457IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.476391468IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-13401457IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-11403462IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MTPLIRSHQS QSGNKASTSY CYGVREGEKP TNSPQEQMHS KVKACTECTR TCWLLHKGNN  60
SVPASSAASF FKVMFGEEEF STLLFLPPKF VKELSLMAGK IAILEDSCGE QWDVRVSRVE  120
GSLAFQQGWS KFALDHDLKM GDFVLFLHIT ETHLVVKIYD STSCEKLKFP ERRSNLIKRK  180
RDSTTTSSGR SGPRGTADGN SIDTSVNFGV AARNGRCPND VIDVVKEPIV TQNKSIWNYK  240
NEFSGAAHNA EYAEETYCIM NREKQEDDIR CNLDLSVLET LNNVGSKRNN KESLTAAERF  300
PKPFDSSMRS QKGACLTSKD QVVKEVSSGA GPLHSFNCEK KGSFSFRDYT NIKTSGNPLP  360
MPVVNPVGNG RNTLNMSNRG IEECQELPEF LPFPYVKGRY GSERKLVFLR DSSQKLWPVV  420
YHENLNVQFI TNGWEAFCKA NGIQSGDQCL FKIENESEGI YSVSGVRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5EIB01e-114A0A2P5EIB0_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-13B3 family protein