PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003206.1
Common NameHlMyb6
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 347aa    MW: 39104.6 Da    PI: 5.7273
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003206.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181764148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd ll++++ ++G g+W++ a++ g++Rt+k+c++rw++yl
  HL.SW.v1.0.G003206.1 17 RGPWTLEEDTLLIHYISLHGEGHWNLLAKRAGLKRTGKSCRLRWLNYL 64
                          89********************************************97 PP
2Myb_DNA-binding51.52.3e-1670113146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  HL.SW.v1.0.G003206.1  70 RGNLTPQEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 113
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3281264IPR017930Myb domain
SuperFamilySSF466891.76E-3015111IPR009057Homeodomain-like
SMARTSM007178.0E-161666IPR001005SANT/Myb domain
PfamPF002496.0E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-231871IPR009057Homeodomain-like
CDDcd001674.11E-121964No hitNo description
PROSITE profilePS5129425.44565119IPR017930Myb domain
SMARTSM007175.7E-1569117IPR001005SANT/Myb domain
PfamPF002492.4E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2372118IPR009057Homeodomain-like
CDDcd001671.84E-1174113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MHTITKCHNE EEAELRRGPW TLEEDTLLIH YISLHGEGHW NLLAKRAGLK RTGKSCRLRW  60
LNYLKPDIKR GNLTPQEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY WRTRVQKQAR  120
QLNIESNSKT FLEAVRRFWM PRLLQKMEQN TTSITCSLSP DSLTTIQNGQ NSSHQELFNP  180
YLPQNSTSGS LLPYTHSSSS SASTSPEEPI ETTAYNSSSD HCLSSVLMTA DQTILSSSPQ  240
ITTSQDQDQL KTTSSSSSSS SSVYYDQAAV TNDNNNNQSL LLLDDQSCCV DHYMDMMSSS  300
SYGIEALNLD PILEIGAYDI SGCQMAAGDW MMHDNMADAL WNMGEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141184107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8736490.0FR873649.1 Humulus lupulus mRNA for Myb transcription factor (HlMyb6 gene), cultivar Osvald's 72, clone 3611.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099251.11e-122transcription factor MYB62
TrEMBLJ9JF550.0J9JF55_HUMLU; Myb transcription factor
STRINGXP_010099251.11e-121(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-85myb domain protein 62