PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003408.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 255aa    MW: 28159.9 Da    PI: 7.1133
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003408.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.44.6e-3052106358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                           ++rY+eC+kNhA+s+G ha+DGC+Efm++ geegt + lkCaAC+CHRnFHR+e++
  HL.SW.v1.0.G003408.1  52 GIRYRECQKNHAVSIGRHALDGCCEFMAA-GEEGTLDVLKCAACNCHRNFHRKEST 106
                           689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-2151105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-2853105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2654104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.3855104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.9E-31181253IPR009057Homeodomain-like
SuperFamilySSF466891.23E-20181252IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-26191247IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFDDHDDQD PDEDMEEIPM APLGYDSSGA RTKTGGVEPD GGTSSTNSRK GGIRYRECQK  60
NHAVSIGRHA LDGCCEFMAA GEEGTLDVLK CAACNCHRNF HRKESTDGSG ATSVSDHHNN  120
YKLYHHGHQF SSSPYYRAPQ PSGYLHHLNT PQAHRCRPLA LPGVTSSGGQ SREEGEDASI  180
PSSSGGGGGS KKRYRTKFTA EQKEKMLEFS ERIGWRIQKH DEATVEQFCL DTGVNRHVLK  240
VWMHNNKHTF GRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-271902491675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450172.14e-93PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2591e-71ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A2P5DB484e-98A0A2P5DB48_TREOI; Octamer-binding transcription factor
STRINGGorai.010G036300.19e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-64homeobox protein 22