PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003626.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 662aa    MW: 76108.3 Da    PI: 10.186
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003626.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-1414104299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           fk+ + + +l++  + +pk+f  +++g    + ++ l+ + g +Wev l  + ++g+++++kGWk F+++  L +g  +vF+++g+s+f
  HL.SW.v1.0.G003626.1  14 FKIIL-EETLRNTKIQIPKTFWMKYSGF--LPSQVFLKLPCGSRWEVGL--TESDGKVWIEKGWKFFAEDCSLSQGNLLVFRYEGNSQF 97 
                           55553.455666679**********555..4456***************..**********************************9*** PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                             +v +f+k
  HL.SW.v1.0.G003626.1  98 --HVIIFDK 104
                           ..**99998 PP
2B354.52.1e-17218314195
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 
                           f   + ps v ++   ++p  fa+++  +    +++ +tl+ ++ r+W+v+++ +kks +   ++++ GWk F+++n+Lk+gD++ F l
  HL.SW.v1.0.G003626.1 218 FMVSMRPSFVEANYTAIIPSLFAKHYllS--ISKHQYVTLKVQDRRTWSVRYRLCKKSPKtikTIFGCGWKAFAQDNDLKVGDVCAFVL 304
                           5667888999999999*******999654..4566689999999********995555555889***********************98 PP

                           -SSSEE..EEE CS
                    B3  85 dgrsefelvvk 95 
                            + s +++++ 
  HL.SW.v1.0.G003626.1 305 RK-SIGKMLFE 314
                           65.55555554 PP
3B352.78e-17382479196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           f  ++   +++ ++++ +p kf+e++ ++ke+  +++l  ++gr W v+l++   ++ +++ +l++GWk F+ +n Lk+gD+++F+l++
  HL.SW.v1.0.G003626.1 382 FTVTMRETYASGHCNFFMPCKFVEKYINQKEC--EVRLWVSDGRFWFVQLKVrqaNGLPRAELLSRGWKAFALDNSLKTGDVCTFELTN 468
                           667788889999**************888777..7***************886667777779************************998 PP

                           S.SEE..EEEE CS
                    B3  87 r.sefelvvkv 96 
                           + +e +++v++
  HL.SW.v1.0.G003626.1 469 NgNEISFRVSI 479
                           76776666666 PP
4B340.84e-135706559100
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +v+  ++l +p +f++ + ++k+   +++      + W+vkl    + +++ +++GW+ F+++n L+ +D+++F+l++rs+ e++v++f
  HL.SW.v1.0.G003626.1 570 HVH-GCQLPFPWTFVSLYLKEKT---QVMTLWVGEECWQVKL--LHYTSKCKFSAGWSAFARENFLQPRDICIFELIRRSQPEMKVHIF 652
                           444.4678899999977754433...36666678899*****..666666679************************************ PP

                           -SS CS
                    B3  98 rks 100
                           r+s
  HL.SW.v1.0.G003626.1 653 RHS 655
                           985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-216105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2010104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-1311103No hitNo description
PROSITE profilePS5086313.23912105IPR003340B3 DNA binding domain
SMARTSM010193.0E-913105IPR003340B3 DNA binding domain
PfamPF023626.0E-1119104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-21211321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20212321IPR015300DNA-binding pseudobarrel domain
CDDcd100177.15E-19216319No hitNo description
SMARTSM010197.3E-10218321IPR003340B3 DNA binding domain
PfamPF023621.9E-15218313IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69218321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-21376481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-21377477IPR015300DNA-binding pseudobarrel domain
CDDcd100176.03E-20380481No hitNo description
PROSITE profilePS5086313.281382483IPR003340B3 DNA binding domain
SMARTSM010198.1E-10382483IPR003340B3 DNA binding domain
PfamPF023621.7E-14382480IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19555655IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-20557656IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-12560653No hitNo description
PROSITE profilePS5086310.8561655IPR003340B3 DNA binding domain
SMARTSM010192.6E-7562655IPR003340B3 DNA binding domain
PfamPF023621.3E-10565654IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAQTKSTPVA PHFFKIILEE TLRNTKIQIP KTFWMKYSGF LPSQVFLKLP CGSRWEVGLT  60
ESDGKVWIEK GWKFFAEDCS LSQGNLLVFR YEGNSQFHVI IFDKTTVEID YPSNPNHFEK  120
RVDTEDDVSI EVLDGFAWRP QIRDKSPLPC SRPHKKMKTS PYGKYKVKFD LSDKERGESP  180
LPRWMEPEFF FKKQMLSAEK KAEALKITKG FKSKDPFFMV SMRPSFVEAN YTAIIPSLFA  240
KHYLLSISKH QYVTLKVQDR RTWSVRYRLC KKSPKTIKTI FGCGWKAFAQ DNDLKVGDVC  300
AFVLRKSIGK MLFEVVIYRG NGVANPPMLP ELKAMPKGSR SSKVESCNTM INRRTSLKPF  360
PCFGKTTALE RASCSYSERP SFTVTMRETY ASGHCNFFMP CKFVEKYINQ KECEVRLWVS  420
DGRFWFVQLK VRQANGLPRA ELLSRGWKAF ALDNSLKTGD VCTFELTNNG NEISFRVSIV  480
KGAGDAYSNQ AANKRKATTP SNRKRKPAVK VGSSFTQNYD KTIMISQKLI IKKEQEKIKV  540
EPSGLGRASE AASQFFSKNP YFQVVLLSIH VHGCQLPFPW TFVSLYLKEK TQVMTLWVGE  600
ECWQVKLLHY TSKCKFSAGW SAFARENFLQ PRDICIFELI RRSQPEMKVH IFRHSGLAQE  660
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1454765334141B3 domain-containing transcription factor VRN1
4i1k_B3e-1454765334141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ381e-148A0A2P5BZ38_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein