PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G003731.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 199aa MW: 22356.2 Da PI: 5.8856

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G003731.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H HL.SW.v1.0.G003731.1 63 YECTFCKRGFSNAQALGGHMNIH 85 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.08E-6	61	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-5	61	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.572	63	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0099	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDFSEQPNQD INNNNPNKDD AASMMIISES SDHDHDHDQH IDGDDDHHQQ PNRSSSSSVA 60 RSYECTFCKR GFSNAQALGG HMNIHRKDKA KLKQSVPPVI PPFSIINHET TQRQRQPLEI 120 PSTTTLVVNP SFIASPNPWL HHQDQGTNIR NDHNINIDDD RLQGKSDDDE SALDLELRLG 180 RVPQDSSTSS NRGTRKFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295977.2	1e-28	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A2P5DQQ8	1e-40	A0A2P5DQQ8_PARAD; Zinc finger transcription factor
STRING	XP_004295977.1	6e-28	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	2e-16	C2H2 family protein