PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004153.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family EIL
Protein Properties Length: 500aa    MW: 56236.5 Da    PI: 4.6498
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004153.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3359.75.5e-110353751353
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX.............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn.............ksneqarrkkmsraQDgiLkYMlkemevcnaqGf 72 
                           +el+krmwkd+m++++lk+++++ + +  ++          +             + +e++rrkkm+raQDg+Lk M+k+mevc+a+Gf
  HL.SW.v1.0.G004153.1  35 DELEKRMWKDRMRMQQLKSQNESDVITTTTTkdhdH-----DaddqpetssaspaRQEEASRRKKMARAQDGVLKNMVKIMEVCKAKGF 118
                           79*******************998766555434441.....13444555556665999******************************* PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TT CS
                  EIN3  73 vYgiipekgkpvegasdsLraWWkekvefdrngpaaisky.qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqr 160
                           vYgi+pe gkpv+g+sdsLraWWke v+fdr++p ai+++      i+++  + q+ + s  h l ++ DTtlgS+Lsalmqhc  pqr
  HL.SW.v1.0.G004153.1 119 VYGIVPEIGKPVSGSSDSLRAWWKEIVKFDRAAPLAIAESlL-PPEIVEE-AGPQMGPASCMHLLGNMDDTTLGSILSALMQHCVSPQR 205
                           ****************************************54.5555553.44456899****************************** PP

                           S--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHH CS
                  EIN3 161 rfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsv 249
                           rfp e+g++pPWWPtGkelwwg++g+  ++++ppy+kphdlkk  kvsvL+  +khm+p+++++r+l+ qsk+lq km+a++s+++++v
  HL.SW.v1.0.G004153.1 206 RFPIERGLAPPWWPTGKELWWGQQGVVPEHNPPPYRKPHDLKKLCKVSVLAVILKHMAPNFNRVRRLVNQSKCLQGKMTAQDSAIWSKV 294
                           *************************999************************************************************* PP

                           HTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.X CS
                  EIN3 250 lnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgse 338
                           +nqee++           +  ++++++s+e+++d e ++  +            +   +krk  + e+++ s++   + cq+  +++se
  HL.SW.v1.0.G004153.1 295 VNQEEALS----------QVAKNRLIISSEDDRDHENDQVDQ------------CISKKKRK-STFEKEASSDSPEPYACQNTLCPQSE 360
                           *****855..........236788999999887766444444............33345555.55666666677778************ PP

                           XXXXXXXXXXXXXXX CS
                  EIN3 339 telifadknsisqne 353
                            + +f d+n ++ +e
  HL.SW.v1.0.G004153.1 361 KSPGFVDNNTRKTQE 375
                           ***********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.0E-10735299No hitNo description
Gene3DG3DSA:1.10.3180.103.7E-60175306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.41E-53178301IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MVIKHLEGMD PLCLGEEMLL TKIEYEEKDE NISYDELEKR MWKDRMRMQQ LKSQNESDVI  60
TTTTTKDHDH DADDQPETSS ASPARQEEAS RRKKMARAQD GVLKNMVKIM EVCKAKGFVY  120
GIVPEIGKPV SGSSDSLRAW WKEIVKFDRA APLAIAESLL PPEIVEEAGP QMGPASCMHL  180
LGNMDDTTLG SILSALMQHC VSPQRRFPIE RGLAPPWWPT GKELWWGQQG VVPEHNPPPY  240
RKPHDLKKLC KVSVLAVILK HMAPNFNRVR RLVNQSKCLQ GKMTAQDSAI WSKVVNQEEA  300
LSQVAKNRLI ISSEDDRDHE NDQVDQCISK KKRKSTFEKE ASSDSPEPYA CQNTLCPQSE  360
KSPGFVDNNT RKTQEMSQLC AFQLGAEITS SEEINVEASD LLTKETSYFN DAQNLSLADD  420
WMNSEANQAV NDTVTESGET FNNIPGVTNF GGYASCLEEL TKYIDQMDQE AAFPLMLDLI  480
IPRIDDDQQV TSIWDMGFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-511763031128Protein ETHYLENE INSENSITIVE 3
4zds_B7e-511763031128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632559.11e-142putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-116EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A2P5FYI21e-144A0A2P5FYI2_TREOI; Ethylene insensitive 3-like protein, DNA-binding domain containing protein
STRINGGorai.003G043500.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-117EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]