PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004221.1
Common NameMyb8
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 449aa    MW: 50847.1 Da    PI: 5.8229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004221.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +grWT eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G004221.1 14 KGRWTSEEDEILTKYIQSNGEGCWRSLPKNAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ + eE++++++++  lG++ W++Ia++++ gRt++++k++w+++l
  HL.SW.v1.0.G004221.1  67 RGNISSEEEDIIIKLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                           7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.143961IPR017930Myb domain
SuperFamilySSF466891.54E-2711108IPR009057Homeodomain-like
SMARTSM007179.3E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
CDDcd001672.52E-81661No hitNo description
PROSITE profilePS5129425.29562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2565116IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002497.3E-1567112IPR001005SANT/Myb domain
CDDcd001671.97E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051555Biological Processflavonol biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTSE EDEILTKYIQ SNGEGCWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSEEEDIIIK LHSTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIHTFR  120
RCNNTTTHHH HHLPNLVTVT KVNLPIPKRK GGRTSRLAMK KNKTSTSNQN SSVIKNDVGS  180
SSSTTTTSVH QRTTTTTPTM DDQQKRQLSR CRLEEKEDQA GASTGTVVMM LGQAAAVAGS  240
SCDEDMLGHD QLSFLCCSEE KTTENSMTNL KENGDHEVSG PYDYDHRYEK ETSVDEGMLL  300
CFNDIIDSNL LNPNEVLTLS EESLNLGGAL MDTTTSTTTN NNNYSLSYNN NGDCVISDDH  360
DQYWLDDVVG VDFWSWESST TVTQEQEQEQ HHQQDQKKNT WDNEKEKMLA LLWDSDNSNW  420
ELQDNNNYHK CQEITSDKEN AMVAWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833350.0HG983335.1 Humulus lupulus mRNA for Myb transcription factor (Myb8 gene), cultivar Osvald's 72, clone 4141.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095299.11e-119transcription factor MYB12
TrEMBLA0A0D6DR760.0A0A0D6DR76_HUMLU; Myb transcription factor
STRINGXP_010095299.11e-119(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-74myb domain protein 12