PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004223.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 170aa    MW: 18228.6 Da    PI: 7.751
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004223.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer872e-27668458
           ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt........aaalkCaACgCHRnFHRreve 58
                          +rYkeC++NhA+s+G havDGC+Efm+     g          +a+ CaACgCHRnFHR+e  
  HL.SW.v1.0.G004223.1  6 IRYKECKRNHAISVGLHAVDGCREFMTPAAGAGGggeqgggdESAFLCAACGCHRNFHRKEIM 68
                          79************************86443322345666669*****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-12167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.8E-25667IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-20767IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.373866IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTSVIIRYKE CKRNHAISVG LHAVDGCREF MTPAAGAGGG GEQGGGDESA FLCAACGCHR  60
NFHRKEIMKD GVVVHYGSSS TIVAPRLAAA PWPSSVVPMY VVVHQPAAVV QPPPADGLSS  120
YHHHQHHPHH LHHHGLLQHG SSGADWDNGE FEQKPNISIK TTNIKKEPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-17mini zinc finger 2