PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004247.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 290aa    MW: 32553.6 Da    PI: 8.2684
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004247.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12671313395
                           -SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3  33 sktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           + + +l  ++g+sW+v++++  ks +      l+ GWk F+ +n L++gD+++F+l+++ + e  ++
  HL.SW.v1.0.G004247.1  67 ECEASLWVSNGKSWSVYYKV--KSIGgytaAQLSHGWKAFALENSLEVGDICTFELMNNCGNEISFR 131
                           4467778889********55..333333457789**********************99877766655 PP
2B343.75e-14194284499
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +l+ sd+ +   l++p +fa+ + ++k++++tl       + W vkli++++  + +  +GW  F+++n L+  D+++F+l++r++ e+
  HL.SW.v1.0.G004247.1 194 ALL-SDHVQGYKLYIPLTFASLYLEEKAQTMTLW---VGEEYWHVKLIVNGSEYK-FSPAGWGAFARENTLQPSDVCIFELIKRNQPEM 277
                           454.45555556********99976666654444...46699*****65555544.5679************************9999* PP

                           EEEEE-S CS
                    B3  93 vvkvfrk 99 
                           +v+++r+
  HL.SW.v1.0.G004247.1 278 KVTIIRE 284
                           ****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-1643134IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1548136No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1349136IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-450138IPR003340B3 DNA binding domain
PfamPF023626.4E-1166130IPR003340B3 DNA binding domain
PROSITE profilePS5086311.47676138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19186285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-18186284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-15189283No hitNo description
PROSITE profilePS5086311.293190285IPR003340B3 DNA binding domain
SMARTSM010195.2E-10191285IPR003340B3 DNA binding domain
PfamPF023627.5E-12196284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQKGSLSSRV ESGNITGLST PRRYQKPSYV YRNTSSLGRG NYFQSEYPSF TVIMKSSYTS  60
GQRTFKECEA SLWVSNGKSW SVYYKVKSIG GYTAAQLSHG WKAFALENSL EVGDICTFEL  120
MNNCGNEISF RVSIVKGDDA DDDAHNYLDK STKMTSEANT GNQGTNKRPL SSVVLTASEA  180
ASHFFSKNPS FQVALLSDHV QGYKLYIPLT FASLYLEEKA QTMTLWVGEE YWHVKLIVNG  240
SEYKFSPAGW GAFARENTLQ PSDVCIFELI KRNQPEMKVT IIRENFLYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1754236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-13related to vernalization1 1