PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004549.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 246aa    MW: 28461.9 Da    PI: 5.9365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004549.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1553.4e-4871381128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                           lppGfrF Pt+eelv++yL++k+e+k+ e+++vik +diy++ePwdLpk     +++++++w+fF++r++++a+g r+nr+t+sgyWka
  HL.SW.v1.0.G004549.1   7 LPPGFRFYPTEEELVSFYLRNKLESKREEINRVIKVIDIYSIEPWDLPKysgeLCQGDTEQWFFFTPRQEREARGGRPNRTTASGYWKA 95 
                           79****************************999***************656654455777***************************** PP

                   NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           tg+   v+s++++++g+kk +vfykg+ap+g+kt+W m+eyr+
  HL.SW.v1.0.G004549.1  96 TGSPSYVYSSDNRVIGVKKAMVFYKGKAPTGRKTKWKMNEYRA 138
                           *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-513163IPR003441NAC domain
PROSITE profilePS5100551.1957165IPR003441NAC domain
PfamPF023657.1E-258137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTPMQELPPG FRFYPTEEEL VSFYLRNKLE SKREEINRVI KVIDIYSIEP WDLPKYSGEL  60
CQGDTEQWFF FTPRQEREAR GGRPNRTTAS GYWKATGSPS YVYSSDNRVI GVKKAMVFYK  120
GKAPTGRKTK WKMNEYRAIE EVNNLNNVAT PMLRHEFSLC RVYIISGSFR AFDRRPVELT  180
RDIQEQQGDQ AGTSNQNAEM VERTPSSPET SCSGDLADNP MAGGSTDWEM NQHPLWEWEQ  240
FNWPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-37716315166Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872891.11e-136NAC domain-containing protein 90-like
SwissprotQ9FMR31e-89NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2P5CWM21e-148A0A2P5CWM2_PARAD; NAC domain containing protein
STRINGXP_010102010.11e-128(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-92NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]