PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004638.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 258aa    MW: 29448.6 Da    PI: 5.5879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004638.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd+ l++ v+++G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G004638.1 14 KGPWTPEEDQVLINFVQKFGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding56.37.1e-1867112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  HL.SW.v1.0.G004638.1  67 RGNFTPEEEETIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.942961IPR017930Myb domain
SuperFamilySSF466899.52E-3310108IPR009057Homeodomain-like
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002492.1E-161461IPR001005SANT/Myb domain
CDDcd001674.52E-111661No hitNo description
PROSITE profilePS5129425.82762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2865117IPR009057Homeodomain-like
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1667112IPR001005SANT/Myb domain
CDDcd001678.18E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQVLINFVQ KFGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPEEEETIIN LHQMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLINKN  120
DNNNSDKDFS PKRHRTSSIS SSSANSSPQQ SSSSSDISTG NETSQNDNKV IVVKDEEYDH  180
HQVSSGSSSD FPEIDESMIW PLDQVVSDGF DDHGDDMLLQ NESLIFNTNY DHQDQYDMEF  240
WYDIFIKAGG SRELPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026796.15e-97transcription factor MYB4
SwissprotQ9SJX87e-81MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2P5FLN01e-106A0A2P5FLN0_TREOI; MYB transcription factor
STRINGAquca_017_00716.11e-88(Aquilegia coerulea)
STRINGXP_009601374.11e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-78myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]