PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005111.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 287aa    MW: 32464.8 Da    PI: 9.9367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005111.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH468.5e-15215239226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kte+C+ +++tG+C+yGd C+FaHg
  HL.SW.v1.0.G005111.1 215 KTEICNKWQETGECPYGDHCQFAHG 239
                           9***********************9 PP
2zf-CCCH18.73.2e-06252276125
                           --S---SGGGGTS.--TTTTT-SS-S CS
               zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                           ykt  Cr  +  G  C+yG rC+F H
  HL.SW.v1.0.G005111.1 252 YKTQVCRMVLN-GvVCPYGHRCHFLH 276
                           78888888888.669*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-18209246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-11211245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788213241IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-9213240IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-12215239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-11247276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-8248277IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535251279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQKYSTNGVV SSNSFFLGDD EFDSDSSITA VAVDDHRRRL YNSLLVQDRQ EMVNRRSLCL  60
NRLRQVSVEV TSLRTENSNL RSINVELNKQ FRLLFQSALQ NRLGSRSVLS EKGFGEERQR  120
TSPIDHSRLK KTVEAIDICS RLPKSISVKS EDYLKVSAQA FVKNGGRSRD SSRSRTSATL  180
QNIVKQKVNV GGGKKKENHG GDPVELDVYK QGALKTEICN KWQETGECPY GDHCQFAHGV  240
EELRPVIRHP RYKTQVCRMV LNGVVCPYGH RCHFLHALPP HDHKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21215276566Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876715.13e-86zinc finger CCCH domain-containing protein 15, partial
SwissprotQ9C9F54e-63C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P5DKE01e-121A0A2P5DKE0_PARAD; Zinc finger, CCCH-type
STRINGXP_009357366.12e-84(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-61C3H family protein