PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005163.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 383aa    MW: 43596.2 Da    PI: 4.5593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005163.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.63.7e-3051215127
                   NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdk 90 
                           frF+Ptd el+ e+Lk k++g + el+++i+e++++k+ePw+Lp k k+k++ kew+f ++ d k  + +k+ +r+tk+gyWk tg+++
  HL.SW.v1.0.G005163.1   5 FRFDPTDAELI-EHLKLKTQGIESELDHFIAEINVHKWEPWELPaKsKLKSDIKEWWFLCPLDYKCLKsSKQVKRSTKTGYWKRTGEER 92 
                           9**********.99************889**************95257778889*********999873667788************99 PP

                   NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           + +      vg+k+ Lvfy+g++    +tdWv+hey 
  HL.SW.v1.0.G005163.1  93 KTKG----CVGMKRNLVFYRGHQ----RTDWVIHEYY 121
                           8866....8**********6544....79*******5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.8661144IPR003441NAC domain
PfamPF023651.7E-184120IPR003441NAC domain
SuperFamilySSF1019415.23E-305144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSKYFRFDPT DAELIEHLKL KTQGIESELD HFIAEINVHK WEPWELPAKS KLKSDIKEWW  60
FLCPLDYKCL KSSKQVKRST KTGYWKRTGE ERKTKGCVGM KRNLVFYRGH QRTDWVIHEY  120
YHPQPHVKRQ DQKPTCVICR LMYDPQRKGR NSDAPDFEEG EPSGNITTAI ESSVASAVSP  180
EEHGHDEVNH QPVLPMLSLD ASTTEQALGF MLDNDMHVPY GENFEISGKT TSFPENPLAF  240
ADNNPSVKWD DGISLSDLEN PISPVVSPSV QAPSGAADES NEHYAALLDS NFMEQPWSFP  300
LDEEMQAPSG AADESNEYYE ELPDLCVVNP KEKDYRETTD YLHNTSSNEL VWSSLDGQFT  360
SDTHTEEVNE QVEGHVHWLL DG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-18514121162NO APICAL MERISTEM PROTEIN
1ut4_B2e-18514121162NO APICAL MERISTEM PROTEIN
1ut7_A2e-18514121162NO APICAL MERISTEM PROTEIN
1ut7_B2e-18514121162NO APICAL MERISTEM PROTEIN
3swm_A2e-18514124165NAC domain-containing protein 19
3swm_B2e-18514124165NAC domain-containing protein 19
3swm_C2e-18514124165NAC domain-containing protein 19
3swm_D2e-18514124165NAC domain-containing protein 19
3swp_A2e-18514124165NAC domain-containing protein 19
3swp_B2e-18514124165NAC domain-containing protein 19
3swp_C2e-18514124165NAC domain-containing protein 19
3swp_D2e-18514124165NAC domain-containing protein 19
4dul_A2e-18514121162NAC domain-containing protein 19
4dul_B2e-18514121162NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2557023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-32NAC transcription factor-like 9