PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005256.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 164aa    MW: 18858.7 Da    PI: 9.687
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005256.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gklye++s
  HL.SW.v1.0.G005256.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSARGKLYEFCS 59
                          79***********************************************96 PP
2K-box782.4e-2680157784
                 K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                            +l+ +++es +q++ kLk+++e L+r+qR+llGedLe L lke+qqLeq+L+ slk+iRs+K+e lle+ +el++k 
  HL.SW.v1.0.G005256.1  80 GKLSGNDTESIYQDYLKLKAKVEVLRRTQRNLLGEDLEHLGLKEIQQLEQKLDMSLKQIRSTKEETLLEENNELKRKV 157
                           3488999*********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
CDDcd002657.41E-42278No hitNo description
SuperFamilySSF554551.29E-32276IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2185157IPR002487Transcription factor, K-box
PROSITE profilePS5129713.13987163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSA RGKLYEFCSG  60
PSIAKTLERY ERCSYGAQEG KLSGNDTESI YQDYLKLKAK VEVLRRTQRN LLGEDLEHLG  120
LKEIQQLEQK LDMSLKQIRS TKEETLLEEN NELKRKVYVN SQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20170169MEF2C
5f28_B7e-20170169MEF2C
5f28_C7e-20170169MEF2C
5f28_D7e-20170169MEF2C
6byy_A6e-20170169MEF2 CHIMERA
6byy_B6e-20170169MEF2 CHIMERA
6byy_C6e-20170169MEF2 CHIMERA
6byy_D6e-20170169MEF2 CHIMERA
6bz1_A7e-20170169MEF2 CHIMERA
6bz1_B7e-20170169MEF2 CHIMERA
6bz1_C7e-20170169MEF2 CHIMERA
6bz1_D7e-20170169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556419e-39KC155641.1 Gossypium hirsutum MADS box protein MADS46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018306.13e-86truncated transcription factor CAULIFLOWER D isoform X2
SwissprotQ396851e-72CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A2P5E2H18e-91A0A2P5E2H1_PARAD; MADS-box transcription factor
STRINGXP_010091612.12e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-65MIKC_MADS family protein