PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005715.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 279aa    MW: 31912.2 Da    PI: 9.6481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005715.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.4e-132751897
                          --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                          +p  f+ ++ + +   +k ++++d sg+ W v l      +  ++++GW+ Fv+++ Lk gDf+vF+++g+s f   v +f
  HL.SW.v1.0.G005715.1  2 IPPAFVGRFiSRV---PKRVVIKDNSGKCWVVAL--VTVEKDLYFENGWEMFVRDQLLKFGDFLVFRYHGNSLF--EVEIF 75
                          6777766663333...557***************..67777799*************************99888..66666 PP
2B336.96.6e-122032612786
                           ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                    B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                           +g+k e+ +++l+  +++ W vk++ +k + r+++++GWk+F ++n+Lk++D + F+l+ g
  HL.SW.v1.0.G005715.1 203 KGVKFEP-DMKLQYHNSKLWPVKISTWKDG-RCFISSGWKQFRQENDLKANDKCKFELVlG 261
                           5555555.8999************988885.899***********************8733 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.917178IPR003340B3 DNA binding domain
PfamPF023627.7E-11275IPR003340B3 DNA binding domain
CDDcd100174.56E-10275No hitNo description
SuperFamilySSF1019364.12E-17280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-17280IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.019278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-4139197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-5140199IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-4143269IPR003340B3 DNA binding domain
PfamPF023622.4E-10203261IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-13206265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-12209263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-9210259No hitNo description
PROSITE profilePS508639.968211275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
LIPPAFVGRF ISRVPKRVVI KDNSGKCWVV ALVTVEKDLY FENGWEMFVR DQLLKFGDFL  60
VFRYHGNSLF EVEIFGGDGC KKEIVVASPQ VKVMVKEEED TLKKKVPSSH AYNHAHIEEI  120
GLDGSTKKSS SPTKHGQLKK NPCFVVTLEH SKCQVFMICI PQSVHKGVKF EPDMKLQYHN  180
SKLWPVKIST WKDGRCFISS VHKGVKFEPD MKLQYHNSKL WPVKISTWKD GRCFISSGWK  240
QFRQENDLKA NDKCKFELVL GEGNVCKEIK VTCQSKVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FY273e-67A0A2P5FY27_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-25B3 family protein