PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005790.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 392aa    MW: 43332.3 Da    PI: 9.4
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005790.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19201249355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+WvAeIr p++   r+r++lg+f+ta+eAa a++ a+  l+g
  HL.SW.v1.0.G005790.1 201 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTADEAAMAYDTAAYMLRG 249
                           8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.05E-31199258No hitNo description
Gene3DG3DSA:3.30.730.107.5E-31200259IPR001471AP2/ERF domain
SMARTSM003805.7E-34200263IPR001471AP2/ERF domain
PROSITE profilePS5103222.168200257IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22200258IPR016177DNA-binding domain
PRINTSPR003671.5E-10201212IPR001471AP2/ERF domain
PfamPF008474.8E-13201249IPR001471AP2/ERF domain
PRINTSPR003671.5E-10223239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDDHHQYAKM ETFLSKGLMP SYFQGISTTG SSFFKDPNML SSLTPTYYAP EEDKNGVVSR  60
SGSESSNSSI EDKTTNTCSS KSLPFVPLNL FKALDPKLTG PQVSEPNSTL FDPPSSSSPS  120
FSSTDQQVQP GIEWLKMTQN FHHQSKGFSS YWLSTTKTQP MKNTGSPRRS SPSPSPSPPS  180
SSLEVSQNQN QKSTFSSVKL FRGVRQRHWG KWVAEIRLPR NRTRVWLGTF DTADEAAMAY  240
DTAAYMLRGD FAHLNFPDMK HQLKANSLNG STAALLEAKL QAISNGIAPS SSNNNQLSSP  300
KKKKVSFKSS KATGLGQNQN QNGRKEREFI GLESKVGCDY HDHHQATMAS HETNTKRSHE  360
LVVPDVDSVQ LSRMPSLDMD IIWEALLVDH T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19199257160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107796.11e-119ethylene-responsive transcription factor ERF062
TrEMBLA0A2P5A6J81e-170A0A2P5A6J8_PARAD; AP2/ERF transcription factor
STRINGXP_010107796.11e-119(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-50ERF family protein