PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005837.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 180aa    MW: 21469.8 Da    PI: 6.2779
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005837.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.25e-17355456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++++++eq+++Le+ F  ++++  e++  LA++lg++ rqV vW+qN+Ra+++
  HL.SW.v1.0.G005837.1  3 KRRLNEEQVRVLERNFLYEKKLEPEHKHLLADQLGIPARQVAVWYQNKRARWR 55
                          45799***********************************************9 PP
2HD-ZIP_I/II104.21.1e-33292292
           HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                          +krrl++eqv++LE++F  e+kLepe+K+ la +Lg+ +rqvavW+qn+RAR++t++lE+d+ +L++++d+  +e++rL++e   Lr el+
  HL.SW.v1.0.G005837.1  2 NKRRLNEEQVRVLERNFLYEKKLEPEHKHLLADQLGIPARQVAVWYQNKRARWRTQNLEVDCITLQHRLDTALAEKRRLQREILMLRGELD 92
                          69************************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.37157IPR001356Homeobox domain
SMARTSM003896.6E-10161IPR001356Homeobox domain
CDDcd000861.05E-10358No hitNo description
PfamPF000462.5E-14355IPR001356Homeobox domain
SuperFamilySSF466894.6E-15361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-17460IPR009057Homeodomain-like
PROSITE patternPS0002703255IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNKRRLNEEQ VRVLERNFLY EKKLEPEHKH LLADQLGIPA RQVAVWYQNK RARWRTQNLE  60
VDCITLQHRL DTALAEKRRL QREILMLRGE LDMARQALQL TNNNTNTIYY DNNIHNNNNV  120
VSSYCTTDQE QGDGRSCSSF YDNPQYEHVI NDYDHHHLDH HDDQALLIDH DFFSNLIDW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451774.12e-43homeobox-leucine zipper protein ATHB-52
RefseqXP_006464812.12e-43homeobox-leucine zipper protein ATHB-52
TrEMBLA0A2P5AR382e-46A0A2P5AR38_PARAD; Octamer-binding transcription factor
STRINGXP_006464812.16e-43(Citrus sinensis)
STRINGXP_006451774.16e-43(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-28homeobox protein 52