PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G005896.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 1002aa    MW: 111041 Da    PI: 5.9304
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G005896.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.9e-41153230178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqve+C adl++ak+yhrrhkvCe+hska ++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  HL.SW.v1.0.G005896.1 153 ICQVEDCGADLTSAKDYHRRHKVCEMHSKAVKALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNP 230
                           5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-33147215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.975151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38152233IPR004333Transcription factor, SBP-box
PfamPF031101.0E-29154227IPR004333Transcription factor, SBP-box
SuperFamilySSF484036.53E-7773886IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-6774887IPR020683Ankyrin repeat-containing domain
CDDcd002043.09E-6774885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MEARFGGEPR HFFGMSSADL TTVRKRTMEW DLNQWKWDGD LFIASSVNPV VPSEGMGRQF  60
FPAGGSSNSN TSSSCSDEGN LVIEKGKREL EKRRRVNAVE DENLNDQTGN LTLKLGGRGH  120
HLHQPASERE MGNWEGTSGK KTKFVGGTSS RAICQVEDCG ADLTSAKDYH RRHKVCEMHS  180
KAVKALVGNV MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTNP DTVANGNSLS  240
DDQTSGYLLI TNKPDQSTEQ DLLSHLLKSL ANQTSEQGGK NVAGLLRDPQ NLLNDGASVG  300
NSEVVSTFLS NCSQGPPRPI KQNHAVSISE MPQQGIHLHD TNGGSVQATS SVKPSIMNSP  360
PSYSEARDST AGHSKMNNFD LNDIYIDSDD GVEDPERSFP PTNLVTSSLD CPSWVQQDSH  420
QSSPPQTNSD SASAQSPSSS NGEAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPS  480
DIESYIRPGC IILTIYLRQS ESAWEELCYD ISSKLSRLLD VSDDTFWSTG WTFIRVQHQI  540
AFVCNGQVIV DTSLPLRSSN CSKIVSIKPI ALPASEKAQF LVRGTNLVRP TMRLFCALEG  600
KYLVQEATHE LMDGDDNSEH DEQCINFSCP IEVTNGRGFI EIEDQGLGSS FFPFLVAEED  660
VCSEIRMLES VLEYTESDTV GDEIGKPESY NQAMDFIHEM GWLLHRSQLR SRLGDSDPNA  720
EPFTLKRFKW LMEFSVDHDW CAVVRKLLDI LIDGSVGEGE DRSLDLALSE IGLLHRAVRR  780
NSKALVEALL KYAPTNLSKL KSEEKSATDA PTPNFLFRPD VTGPGGLTPL HIAAGKDGSE  840
DVLDALTNDP GMVGIEAWKS ARDSTGSTPE DYARLRGHYT YIRLIQRKIN KKPGSGHVVV  900
DIPGDQKEDC SSNQKQNELA NTTTFEIGRS EQRRIQRPCG LCDRKLAYST SSRSVVYRPA  960
MLSMVAIAAV CVCVALLFKS SPEVLYVFRP FRWEMLEFGT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31147227484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091413.10.0squamosa promoter-binding-like protein 1
RefseqXP_024018150.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A2P5ETD20.0A0A2P5ETD2_TREOI; SBP-box transcription factor
STRINGXP_010091413.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]