PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G005922.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NZZ/SPL

Protein Properties

Length: 402aa MW: 42797.8 Da PI: 7.6435

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G005922.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	25.5	2.3e-08	1	89	1	81
NOZZLE 1 matslff..mstdqnsvrnpnellrntrlv..vnssgeirte...tkks...rgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkkl 81 m+tsl f m+td+ s el n + vn s e + e ks rgrkp k + +k+p rg+gva+ler +++e kk HL.SW.v1.0.G005922.1 1 MSTSLRFgvMATDEISPSH-HELRTNKGALssVNGSLEAKREvggGAKSssgRGRKPTNKGPSNTKKQP-QRGLGVAQLERLRLQEWKKIN 89 6677766446666665433.344444433311344444444433322322449*****988887777.5************999843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.4E-5	31	89	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MSTSLRFGVM ATDEISPSHH ELRTNKGALS SVNGSLEAKR EVGGGAKSSS GRGRKPTNKG 60 PSNTKKQPQR GLGVAQLERL RLQEWKKINE MPQQVLHPGT PTAAGALNFP VPAPVVDHNS 120 FQFQMVPNSV ITAMTEPLHS VPVQYGAGGS YGAGTTRFLS AVVHQPGHVA AASGFMSCSG 180 DCGSSPAGIL EHRSVVVDPH HPHPHPHHHL HHPYHHCYGI LNSNGSLGSS PDQMFPAGAA 240 VYDHHPHHEN SKELSSIPKM QSFINPSQLQ DRSDFCFKKT RFNGENIGEL TLGLGTRGVR 300 STSHDDEGLE IVAVHRKVNS VSGGVVMEYE FFPGKNDSCG ISGTGSNEIL MKKMPTSSDH 360 PTSISVADEA SYINTFSASA AATTTTYGSD ISNPVDLSLK L*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MSTSLRFGVM ATDEISPSHH ELRTNKGALS SVNGSLEAKR EVGGGAKSSS GRGRKPTNKG  60
PSNTKKQPQR GLGVAQLERL RLQEWKKINE MPQQVLHPGT PTAAGALNFP VPAPVVDHNS  120
FQFQMVPNSV ITAMTEPLHS VPVQYGAGGS YGAGTTRFLS AVVHQPGHVA AASGFMSCSG  180
DCGSSPAGIL EHRSVVVDPH HPHPHPHHHL HHPYHHCYGI LNSNGSLGSS PDQMFPAGAA  240
VYDHHPHHEN SKELSSIPKM QSFINPSQLQ DRSDFCFKKT RFNGENIGEL TLGLGTRGVR  300
STSHDDEGLE IVAVHRKVNS VSGGVVMEYE FFPGKNDSCG ISGTGSNEIL MKKMPTSSDH  360
PTSISVADEA SYINTFSASA AATTTTYGSD ISNPVDLSLK L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5EMF3	1e-68	A0A2P5EMF3_TREOI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8365	17	23