PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G006253.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 111aa MW: 13095.2 Da PI: 7.934

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G006253.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.6	4.9e-14	47	110	2	66
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkakl 66 fY++YAk vGFsvr++ +k++ +g i ++vCs+eg+r+e + ++++r++ tr+gC+a++ HL.SW.v1.0.G006253.1 47 FYKTYAKWVGFSVRIDDTKYR--DGIISICRWVCSNEGFRREIFMNlPNRKKRPKDITRCGCQAEI 110 9*************98887..999************98887889999********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-11	47	110	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MMDIDLSFNP HWEEILSSLH LYKLVAKIDI NDILGKEMDT LDKWEAFYKT YAKWVGFSVR 60 IDDTKYRDGI ISICRWVCSN EGFRREIFMN LPNRKKRPKD ITRCGCQAEI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15947	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-09	FAR1-related sequence 5