PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006309.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 100aa    MW: 11328 Da    PI: 10.1103
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006309.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.92.4e-322474151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  HL.SW.v1.0.G006309.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 74
                          79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.9921676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-301776IPR002100Transcription factor, MADS-box
CDDcd002651.33E-391778No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-341838IPR002100Transcription factor, MADS-box
PfamPF003191.5E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-343853IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-345374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MEFPNQEAES SSHRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNRSQLL SLSLSLSSSY LTILFTTFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-221674159Myocyte-specific enhancer factor 2B
1tqe_Q6e-221674159Myocyte-specific enhancer factor 2B
1tqe_R6e-221674159Myocyte-specific enhancer factor 2B
1tqe_S6e-221674159Myocyte-specific enhancer factor 2B
6c9l_A6e-221674159Myocyte-specific enhancer factor 2B
6c9l_B6e-221674159Myocyte-specific enhancer factor 2B
6c9l_C6e-221674159Myocyte-specific enhancer factor 2B
6c9l_D6e-221674159Myocyte-specific enhancer factor 2B
6c9l_E6e-221674159Myocyte-specific enhancer factor 2B
6c9l_F6e-221674159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146364.19e-46hypothetical protein PHAVU_006G034400g
SwissprotQ015403e-39AG_BRANA; Floral homeotic protein AGAMOUS
SwissprotQ408853e-39AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A314U8G61e-45A0A314U8G6_PRUYE; Agamous-like MADS-box protein AGL1
STRINGEOX929822e-44(Theobroma cacao)
STRINGXP_007146364.13e-45(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.21e-40MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]