PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006446.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 415aa    MW: 45540.8 Da    PI: 7.5002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006446.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l+ +++q+G g W++ +++ g+ R++k+c++rw +yl
  HL.SW.v1.0.G006446.1 14 KGAWTPEEDQKLLSYIQQHGEGGWRSLPHKAGLSRCGKSCRLRWANYL 61
                          79********************************************97 PP
2Myb_DNA-binding56.66e-1867110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg +++eE++ +++++  lG++ W+tIa+ ++ gRt++++k++w++
  HL.SW.v1.0.G006446.1  67 RGEFSPEEEQTIIRLHSILGNR-WSTIAKNLP-GRTDNEIKNHWNT 110
                           899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.027961IPR017930Myb domain
SuperFamilySSF466892.4E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002497.0E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-241568IPR009057Homeodomain-like
CDDcd001671.29E-101661No hitNo description
PROSITE profilePS5129427.32862116IPR017930Myb domain
SMARTSM007172.9E-1766114IPR001005SANT/Myb domain
PfamPF002494.6E-1667110IPR001005SANT/Myb domain
CDDcd001676.78E-1369112No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2669117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGRNPCYNVE GLKKGAWTPE EDQKLLSYIQ QHGEGGWRSL PHKAGLSRCG KSCRLRWANY  60
LRPDIKRGEF SPEEEQTIIR LHSILGNRWS TIAKNLPGRT DNEIKNHWNT RLRKRLIQLG  120
TYHNPNNNSS STTSTQLAKN DLTDPPNSKG SNISTTSTTT TTSAHQILNE LAASPNLKSS  180
NCLASLLSRP IGGSGGCSDN AEGRDKKVLN SATVLNKVAT TCLKNNELQS CPIQEAVKTV  240
LSKSSTPSRE AATNHSESYS ISIPNINWAN NTSCMESPNA ETGSMDQESK YVNSATSPRV  300
LVLNEMASKL AHMKRRRPAL LSSTDWRARG VLCEPMGSPA AAIPAESPVS QSSHDVWLLH  360
DMGFDPQDLF SEEIPSAKDD FNYNTVSDAG DDLDQVDQLM RNLIVNFGDD LIYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2991162108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5D2201e-131A0A2P5D220_PARAD; GAMYB transcription factor
TrEMBLA0A2P5F7001e-131A0A2P5F700_TREOI; GAMYB transcription factor
STRINGXP_010093590.14e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3217922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.18e-65myb domain protein 34