PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007115.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 248aa    MW: 27119.8 Da    PI: 7.4579
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007115.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.68.3e-24198246149
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                           +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr 
  HL.SW.v1.0.G007115.1 198 RCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRL 246
                           6**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-25193245IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.529196247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-22197246IPR004333Transcription factor, SBP-box
PfamPF031101.9E-17199246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLDYEWGRVS AMMLTGEEHE QPPGSDPNRH NILDHYANAA AQTAFNDNLL AAQPGTNGSA  60
FANHHFNTTA THNQNHHHHH NHHHDSQAQV HSTHHVHPSL YDPRSYSGAS SYAPQHPSML  120
SLDPVLGGGG GGGGGHGGSG GFMLVPKSED MCRPPVDFSS RIGLNLGGRT YFSSEDDFMN  180
RLYRRPRPLD PASAHSPRCQ AEGCNADLSH AKHYHRRHKV CEFHSKASTV IAAGLTQRFC  240
QQCSRLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-17199246653squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052207.28e-91PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_015889429.17e-92squamosa promoter-binding-like protein 8
RefseqXP_015889430.17e-92squamosa promoter-binding-like protein 8
RefseqXP_024931908.17e-92squamosa promoter-binding-like protein 8
SwissprotQ8GXL38e-51SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A2P5C9P41e-120A0A2P5C9P4_TREOI; SBP-box transcription factor
STRINGEOX963642e-90(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.26e-49squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]