PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G007619.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 268aa MW: 29104.6 Da PI: 8.4841

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G007619.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	14	71	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+ HL.SW.v1.0.G007619.1 14 ALVKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV 71 5689***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	1	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-33	15	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	16	70	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	18	54	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEQQQKLRPP HDHALVKCPR CDSTHTKFCY YNNYSLSQPR YFCKTCRRYW TKGGTLRNIP 60 VGGGCRKNKK VAPKKPSDNN LGVVLVNNKN NGGGLNNNPV GGSATDLQLS FPDQVQFSHL 120 SNLLGSHGPG PNGFFESPRP IDFMKSNTTT TDLGMVGMGL GNLGASSHHH GMEQNFHGLC 180 SPFGMSLDGT GTGTFMDTCQ RIMMSYEGNH GDQNGIDVKP NTKLSSLDWQ DHGCTDAGKD 240 SFGYFNSLGS WSGVMNNYGP STMNPLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021292203.1	1e-115	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	4e-43	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A2P5AF62	1e-132	A0A2P5AF62_PARAD; Zinc finger, Dof-type
STRING	EOY20732	1e-113	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	4e-39	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]