PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007727.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HB-other
Protein Properties Length: 222aa    MW: 25259.2 Da    PI: 4.0778
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007727.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.43.1e-051892181241
                           HHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
              Homeobox  12 leeLeelFeknrypsaeereeLAkklgLte 41 
                           +e+L ++F++n  ps++ +e L+k+lgL+ 
  HL.SW.v1.0.G007727.1 189 VERLRQVFAENELPSRDVKENLSKELGLDS 218
                           789*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-6176218IPR009057Homeodomain-like
CDDcd000862.78E-4178217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEIFEAVNAH LGTYFSMNNS WEDVFEGEAA LPEDANASLH PDVEWPSDDS EDENYDPERK  60
ENSNSISGAD SDDNVWEDEF SSDGSVGSDE SDAGVVCGRR QRRDVDYRKL YDEMFGKDAP  120
PYEQISEDED WGPAKRKRRE KESDAASTLM TLFESEKVNS DVDVEDVGRK LPPEAQIRRS  180
FFRIPRIAVE RLRQVFAENE LPSRDVKENL SKELGLDSEK Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893916.11e-108pathogenesis-related homeodomain protein isoform X1
RefseqXP_015893988.11e-108pathogenesis-related homeodomain protein isoform X2
SwissprotP487855e-47PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2P5C6N91e-125A0A2P5C6N9_TREOI; Octamer-binding transcription factor
STRINGXP_010087997.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.23e-47pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]