PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007775.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 393aa    MW: 42949.2 Da    PI: 6.8561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007775.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-21186235255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g
  HL.SW.v1.0.G007775.1 186 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRG 235
                           8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-33185244IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23186244IPR016177DNA-binding domain
PfamPF008472.3E-14186235IPR001471AP2/ERF domain
SMARTSM003801.9E-36186249IPR001471AP2/ERF domain
CDDcd000181.38E-22186245No hitNo description
PROSITE profilePS5103225.686186243IPR001471AP2/ERF domain
PRINTSPR003671.0E-11187198IPR001471AP2/ERF domain
PRINTSPR003671.0E-11209225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCVLKVANSG DNKLIISNNN NNNGEYNWLN ESPLFYSGEP IMATGFGLMD REREMNAMVS  60
ALTRVVSGDS TDFTGRHHHH PNQWLEMSAS ASSDMGSGSG SGSYGNKRGR DEGGSDLSTE  120
SVSRLCRAFG DHPFPTQASN SALEETSYMW RSCTGPTQTT SFTSTYEYHQ EFPQRQQPEQ  180
EQPRRKYRGV RQRPWGKWAA EIRDPFKAAR VWLGTFDTAE AAARAYDEAA LRFRGNKAKL  240
NFPENVRLRS HPGNPAGTQL VVSDSTNTLL SVSTSAEPIV HSQVQLRSCT LSSSSDVVSR  300
NLQSYSPHVL NSERTMSLYD QMVLSQSVAS HVSSSSSLSP SASSSPFFSS SVSSSSPSLQ  360
LPSFSSPFWV EPPVQLRPAA SDSSPSNFPA EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23185246163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9804472e-57KM980447.1 Betula platyphylla ethylene response factor protein 3 (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021449.11e-79ethylene-responsive transcription factor ABR1
TrEMBLA0A2P5BG711e-140A0A2P5BG71_PARAD; AP2/ERF transcription factor
STRINGXP_010096464.13e-69(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-20related to AP2 6