PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008251.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 88aa MW: 10246 Da PI: 11.0704

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008251.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.3e-10	20	65	44	88
FAR1 44 ekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++ ++++++r+ t+tgC a l+vk +k ++ w+v++++ HnH HL.SW.v1.0.G008251.1 20 WTNLMNRKKKPRVLTHTGCLALLRVKFDKsKNSWVVKDFNPVHNHG 65 333378999****************9999************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-7	22	65	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MSTTYAFRAQ FPTWSRREKW TNLMNRKKKP RVLTHTGCLA LLRVKFDKSK NSWVVKDFNP 60 VHNHGHALKT DMQFLRPNCV VPDCMSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15947	4	7