PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008781.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 285aa    MW: 32388.5 Da    PI: 8.823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008781.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-162269148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd+ll d++ ++G g W++++++  ++R++k+c++rw++yl
  HL.SW.v1.0.G008781.1 22 KGAWTREEDDLLRDCIDKYGEGKWHLVPSRAELNRCRKSCRLRWLNYL 69
                          79********************************************97 PP
2Myb_DNA-binding301.2e-09831102048
                           TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  20 GggtWktIartmgkgRtlkqcksrwqkyl 48 
                           G+g W++Ia +++ gRt++++k++w+++l
  HL.SW.v1.0.G008781.1  83 GTGKWSLIAGRIP-GRTANDVKNYWNTHL 110
                           7889*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.0771773IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-221872IPR009057Homeodomain-like
SMARTSM007173.6E-142171IPR001005SANT/Myb domain
PfamPF002493.5E-152269IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-2222109IPR009057Homeodomain-like
CDDcd001671.89E-102469No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1273114IPR009057Homeodomain-like
PROSITE profilePS5129410.59674114IPR017930Myb domain
SMARTSM007170.002574112IPR001005SANT/Myb domain
PfamPF002491.0E-783110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009745Biological Processsucrose mediated signaling
GO:0009753Biological Processresponse to jasmonic acid
GO:0019430Biological Processremoval of superoxide radicals
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVTVLVTEQT EGGSSGTAAV RKGAWTREED DLLRDCIDKY GEGKWHLVPS RAELNRCRKS  60
CRLRWLNYLK PDIKRGEFTA DEGTGKWSLI AGRIPGRTAN DVKNYWNTHL GKKVMRSYDK  120
LKHVKKKDDD KFILKSNIIK PRPRTFKNQL ALMNNSYTAT TIENKNIGSP LPPHDVYTLT  180
KPGHVLEKNN KNSGWESLLD MINNENHEFM NPISNTGLDE EYNFANFSEL GFVSHQPSNS  240
KIKDSTTNNS SVFLTDSYQN CSTDFAMDMD LWDLGIASKD KEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-16161141108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026656.15e-69transcription factor MYB113-like
TrEMBLA0A191TGK85e-61A0A191TGK8_PONTR; Myb transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.18e-53production of anthocyanin pigment 1