PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008794.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 214aa MW: 24416.9 Da PI: 9.4301

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008794.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.6e-19	53	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++ GF +r+ +s+ks+r+g+i++r + C g +++++k e +++ +r C+a++ +k+e++g+w+v k+++eHnH+l+ HL.SW.v1.0.G008794.1 53 FYDDYARKKGFLTRVLSSRKSERDGSIISRGLGCR--GLPDNRTKI---EIQKQGRQRDVCTAMILLKRENNGRWVVRKFVSEHNHPLV 136 9*******************************6..666666555...6788899999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-17	53	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEAMLECRVD VQMGDGIERI GTYAGESSAL EGGSDMEPHE GMVFESEEAG RAFYDDYARK 60 KGFLTRVLSS RKSERDGSII SRGLGCRGLP DNRTKIEIQK QGRQRDVCTA MILLKRENNG 120 RWVVRKFVSE HNHPLVVHLQ KSRRILDDKD KKIQELTAEL RVKKRLSASY REQLLAVMKD 180 VEEHNGNVSN IVQLVYENLR KLESKRQQPL CRG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886990.2	4e-95	protein FAR1-RELATED SEQUENCE 2-like
Swissprot	Q9SZL8	1e-17	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P5CSK3	1e-118	A0A2P5CSK3_PARAD; FHY3/FAR1 family
STRING	EMJ28399	2e-82	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-53	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]