PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008834.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 353aa    MW: 39841.4 Da    PI: 4.9478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008834.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19203253255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ta +Aaka+++a+ kl+g
  HL.SW.v1.0.G008834.1 203 HYRGVRRRP-WGKYAAEIRDP---KrKGCRVWLGTYDTAIDAAKAYDRAAFKLRG 253
                           69*******.**********8...3334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.36E-30203261No hitNo description
PROSITE profilePS5103224.012203261IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22203263IPR016177DNA-binding domain
SMARTSM003806.1E-36203267IPR001471AP2/ERF domain
PfamPF008471.7E-13203253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-31203262IPR001471AP2/ERF domain
PRINTSPR003671.8E-13204215IPR001471AP2/ERF domain
PRINTSPR003671.8E-13243263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAAMNDASKL EYIKQLLLGD LSPNPIRPGS NFTQNEWPTS DHHQVVDTDF SLSQSDSFSS  60
SSDSMLEIST YLEDSNDFFD FSSNQIQFLP NTNANDLEEA KPQLIHFTTS KPCNNLTIQL  120
SNSSLEFNFQ PEVFDARVPT FQTNNALFEF ESEPQILNHT SSQSSRKPSL TISLPSKTEW  180
IQFGDPNPRE SVQEKASEED QMHYRGVRRR PWGKYAAEIR DPKRKGCRVW LGTYDTAIDA  240
AKAYDRAAFK LRGSKAILNF PLETGNFKRS AVVQTKRRRE DEEATECNAV VAVKKEKLTE  300
FDDAISYIKD MPLTPSDWTT VCEREGKGFL NVPPLSPLSP HPMLGYSQLM VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-29203262261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104815.13e-95ethylene-responsive transcription factor 5
TrEMBLA0A2P5CVM21e-135A0A2P5CVM2_TREOI; AP2/ERF transcription factor
STRINGXP_010104815.11e-94(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-51ethylene responsive element binding factor 5